PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482768.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 491aa    MW: 53472.3 Da    PI: 9.3384
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482768.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-057597123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k F r  nL+ H r H
  XP_016482768.1 75 FVCEVCNKGFQREQNLQLHRRGH 97
                    89*******************88 PP
2zf-C2H215.45.5e-05151173123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC++C+k +  +s+ k H +t+
  XP_016482768.1 151 YKCEKCSKKYAVQSDWKAHTKTC 173
                     9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-67497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.93E-87497No hitNo description
PfamPF121713.1E-57597IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0947597IPR007087Zinc finger, C2H2
SMARTSM003550.00417597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355130116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.93E-8146171No hitNo description
SMARTSM0035571151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MAAGPSSAVF LAMREEEQNQ QMKQQQQQQQ ELHIQQQPQQ QQAPQKKRRN QPGTPNPDAE  60
IIALSPKTLM ATNRFVCEVC NKGFQREQNL QLHRRGHNLP WKLKQKSTKE VKRKVYLCPE  120
PTCVHHDPSR ALGDLTGIKK HYSRKHGEKK YKCEKCSKKY AVQSDWKAHT KTCGTREYKC  180
DCGTLFSRRD SFITHRAFCD ALAQESARNP PSLSSIGSHL YGSSNNMSLG LSKMGSQISD  240
HSNSTDILHF GSSSNIKTSG QFDHSNLMGT TSIGASAFRP STSFFLPADQ TNHQDYAANK  300
PSIHGLMQLP DLHNNGNNNS SPSVASMFNL NFFQNSNNNS ENVGSHGNSN ISAGGGGLLL  360
PSHQFSNSSG DGSNNSSNMF SASSLLGTDH HISSSIPSLY GNHLNNNSSA SPAPPMSATA  420
LLQKAAQMGS TTSNNNMNNS SASLLKAFGS SSSATKSDIH PPPPVNFGSV VYGDPLSENH  480
LHDLVVNAYV M
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-110HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482768.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X2
SwissprotQ9ZUL31e-126IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0V0IN590.0A0A0V0IN59_SOLCH; Putative zinc finger protein MAGPIE-like
STRINGPOPTR_0010s10950.11e-178(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-106indeterminate(ID)-domain 5